Detailed Description

Check & correct if necessary that isotopic masses used in different multi-gauss fits are consistent.

Use to determine whether or not attributed masses are consistent for a set of KVIDZAFromZGrid using multi-gauss isotope fits, and correct where necessary.

Example

KVIDZAFromZGridMassHomogenizer gmh("my_grids.dat", "my_data.root");
 
gmh.Analyse(0.8);
gmh.Print();
 
...[example output]...
Z = 12 :
      25 : 1    {ID_SI1_SI2_443}
        26 : 2  {ID_SI1_SI2_112, ID_SI1_SI2_143}
        25-26 : 161 {ID_SI1_SI2_1011, ID_SI1_SI2_1012, ID_SI1_SI2_1013, ID_SI1_SI2_1014, ID_SI1_SI2_1021, ... }
Z = 13 :
    27-28 : 71  {ID_SI1_SI2_1012, ID_SI1_SI2_1021, ID_SI1_SI2_1032, ID_SI1_SI2_1034, ID_SI1_SI2_111, ... }
    26-27 : 92  {ID_SI1_SI2_1011, ID_SI1_SI2_1013, ID_SI1_SI2_1014, ID_SI1_SI2_1022, ID_SI1_SI2_1023, ... }
Z = 14 :
    29-30 : 20  {ID_SI1_SI2_1114, ID_SI1_SI2_411, ID_SI1_SI2_412, ID_SI1_SI2_442, ID_SI1_SI2_511, ... }
    30 : 142    {ID_SI1_SI2_1011, ID_SI1_SI2_1012, ID_SI1_SI2_1013, ID_SI1_SI2_1014, ID_SI1_SI2_1021, ... }
...
 
gmh.CorrectMasses(13, "26-27", 1, KVItvFinderDialog::mass_fit_parameters); // increase A by 1 for Z=13 isotopes in all grids in list {ID_SI1_SI2_1011, ID_SI1_SI2_1013, ... }

Note: For reasons beyond our ken, the default parameters for fitting the gaussians to PID spectra are part of the GUI class KVItvFinderDialog. They should obviously be part of KVMultiGaussIsotopeFit but this causes problems with ROOT/Cling which are for the moment incomprehensible.

Definition at line 44 of file KVIDZAFromZGridMassHomogenizer.h.

#include <KVIDZAFromZGridMassHomogenizer.h>

Inheritance diagram for KVIDZAFromZGridMassHomogenizer:

[legend]

Public Member Functions
	KVIDZAFromZGridMassHomogenizer (const TString &gridfile, const TString &datafile)

void	Analyse (double min_yield)

void	Clear ()

void	CorrectMasses (int Z, const std::string &alist, int deltaA, const KVNameValueList &mass_fit_parameters)

void	CorrectMassesForTelescope (int Z, const TString &idtel, int deltaA, const KVNameValueList &mass_fit_parameters)

KVIDZAFromZGrid *	GetGrid (const TString &gridname)

void	Print () const

void	SaveGrids (const TString &filename)
	Save all grids: overwrites original file if no filename given (filename=""), otherwise writes a new file. More...

void	ShowFits (int Z, const std::string &alist)

Public Member Functions inherited from KVBase
	KVBase ()
	Default constructor. More...

	KVBase (const Char_t name, const Char_t title="")
	Ctor for object with given name and type. More...

	KVBase (const KVBase &)
	copy ctor More...

void	Clear (Option_t *opt="") override
	Clear object properties : name, type/title, number, label. More...

void	Copy (TObject &) const override
	Make a copy of this object. More...

const Char_t *	GetLabel () const

UInt_t	GetNumber () const

virtual TObject *	GetObject () const

virtual const Char_t *	GetType () const

Bool_t	HasLabel () const

Bool_t	IsCalled (const Char_t *name, bool case_insensitive=false) const

Bool_t	IsLabelled (const Char_t *l, bool case_insensitive=false) const

Bool_t	IsType (const Char_t *typ, bool case_insensitive=false) const

virtual void	List ()

KVBase &	operator= (const KVBase &)
	copy assignment operator More...

void	Print (Option_t *option="") const override

void	SetLabel (const Char_t *lab)

virtual void	SetNumber (UInt_t num)

virtual void	SetType (const Char_t *str)

Public Member Functions inherited from TNamed
	TNamed ()

	TNamed (const char name, const char title)

	TNamed (const TNamed &named)

	TNamed (const TString &name, const TString &title)

virtual	~TNamed ()

TObject *	Clone (const char *newname="") const override

Int_t	Compare (const TObject *obj) const override

virtual void	FillBuffer (char *&buffer)

const char *	GetName () const override

const char *	GetTitle () const override

ULong_t	Hash () const override

TClass *	IsA () const override

Bool_t	IsSortable () const override

void	ls (Option_t *option="") const override

TNamed &	operator= (const TNamed &rhs)

virtual void	SetName (const char *name)

virtual void	SetNameTitle (const char name, const char title)

virtual void	SetTitle (const char *title="")

virtual Int_t	Sizeof () const

void	Streamer (TBuffer &) override

void	StreamerNVirtual (TBuffer &ClassDef_StreamerNVirtual_b)

Public Member Functions inherited from TObject
	TObject ()

	TObject (const TObject &object)

virtual	~TObject ()

void	AbstractMethod (const char *method) const

virtual void	AppendPad (Option_t *option="")

virtual void	Browse (TBrowser *b)

ULong_t	CheckedHash ()

virtual const char *	ClassName () const

virtual void	Delete (Option_t *option="")

virtual Int_t	DistancetoPrimitive (Int_t px, Int_t py)

virtual void	Draw (Option_t *option="")

virtual void	DrawClass () const

virtual TObject *	DrawClone (Option_t *option="") const

virtual void	Dump () const

virtual void	Error (const char method, const char msgfmt,...) const

virtual void	Execute (const char method, const char params, Int_t *error=nullptr)

virtual void	Execute (TMethod method, TObjArray params, Int_t *error=nullptr)

virtual void	ExecuteEvent (Int_t event, Int_t px, Int_t py)

virtual void	Fatal (const char method, const char msgfmt,...) const

virtual TObject *	FindObject (const char *name) const

virtual TObject *	FindObject (const TObject *obj) const

virtual Option_t *	GetDrawOption () const

virtual const char *	GetIconName () const

virtual char *	GetObjectInfo (Int_t px, Int_t py) const

virtual Option_t *	GetOption () const

virtual UInt_t	GetUniqueID () const

virtual Bool_t	HandleTimer (TTimer *timer)

Bool_t	HasInconsistentHash () const

virtual void	Info (const char method, const char msgfmt,...) const

virtual Bool_t	InheritsFrom (const char *classname) const

virtual Bool_t	InheritsFrom (const TClass *cl) const

virtual void	Inspect () const

void	InvertBit (UInt_t f)

Bool_t	IsDestructed () const

virtual Bool_t	IsEqual (const TObject *obj) const

virtual Bool_t	IsFolder () const

R__ALWAYS_INLINE Bool_t	IsOnHeap () const

R__ALWAYS_INLINE Bool_t	IsZombie () const

void	MayNotUse (const char *method) const

virtual Bool_t	Notify ()

void	Obsolete (const char method, const char asOfVers, const char *removedFromVers) const

void	operator delete (void *ptr)

void	operator delete (void ptr, void vp)

void	operator delete[] (void *ptr)

void	operator delete[] (void ptr, void vp)

void *	operator new (size_t sz)

void *	operator new (size_t sz, void *vp)

void *	operator new[] (size_t sz)

void *	operator new[] (size_t sz, void *vp)

TObject &	operator= (const TObject &rhs)

virtual void	Paint (Option_t *option="")

virtual void	Pop ()

virtual Int_t	Read (const char *name)

virtual void	RecursiveRemove (TObject *obj)

void	ResetBit (UInt_t f)

virtual void	SaveAs (const char filename="", Option_t option="") const

virtual void	SavePrimitive (std::ostream &out, Option_t *option="")

void	SetBit (UInt_t f)

void	SetBit (UInt_t f, Bool_t set)

virtual void	SetDrawOption (Option_t *option="")

virtual void	SetUniqueID (UInt_t uid)

void	StreamerNVirtual (TBuffer &ClassDef_StreamerNVirtual_b)

virtual void	SysError (const char method, const char msgfmt,...) const

R__ALWAYS_INLINE Bool_t	TestBit (UInt_t f) const

Int_t	TestBits (UInt_t f) const

virtual void	UseCurrentStyle ()

virtual void	Warning (const char method, const char msgfmt,...) const

virtual Int_t	Write (const char *name=nullptr, Int_t option=0, Int_t bufsize=0)

virtual Int_t	Write (const char *name=nullptr, Int_t option=0, Int_t bufsize=0) const

Additional Inherited Members
Public Types inherited from KVBase
enum	EKaliVedaBits { kIsKaliVedaObject = BIT(23) }

enum class	GetX_status { ok , above_maximum , below_minimum , at_maximum , at_minimum }

Public Types inherited from TObject
enum	EDeprecatedStatusBits

enum	EStatusBits

Static Public Member Functions inherited from KVBase
static std::optional< TString >	AbsoluteUnixPath (const TString &)

static Bool_t	AreEqual (Double_t x, Double_t y, Long64_t maxdif=1)
	Comparison between two 64-bit floating-point values. More...

static void	BackupFileWithDate (const Char_t *path)

static void	CombineFiles (const Char_t file1, const Char_t file2, const Char_t *newfilename, Bool_t keep=kTRUE)

static void	Deprecated (const char method, const char advice)

static Bool_t	FindClassSourceFiles (const KVString &class_name, KVString &imp_file, KVString &dec_file, const KVString &dir_name=".")

static Bool_t	FindExecutable (TString &exec, const Char_t *path="$(PATH)")

static const Char_t *	FindFile (const Char_t *search, TString &wfil)

static const Char_t *	GetBINDIRFilePath (const Char_t *namefile="")

static const Char_t *	GetDATABASEFilePath ()

static const Char_t *	GetDATADIRFilePath (const Char_t *namefile="")

template<typename ValType >
static ValType	GetDataSetEnv (const KVString &dataset, const KVString &type, const ValType &defval={})

static const Char_t *	GetETCDIRFilePath (const Char_t *namefile="")

static const Char_t *	GetExampleFilePath (const Char_t library, const Char_t namefile)
	Return full path to example file for given library (="KVMultiDet", "BackTrack", etc.) More...

static const Char_t *	GetINCDIRFilePath (const Char_t *namefile="")

static const Char_t *	GetKVBuildDate ()
	Returns KaliVeda build date. More...

static const Char_t *	GetKVBuildDir ()
	Returns top-level directory used for build. More...

static const Char_t *	GetKVBuildTime ()
	Returns KaliVeda build time. More...

static const Char_t *	GetKVBuildType ()
	Returns KaliVeda build type (cmake build: Release, Debug, RelWithDebInfo, ...) More...

static const Char_t *	GetKVBuildUser ()
	Returns username of person who performed build. More...

static int	GetKVMajorVersion ()

static int	GetKVMinorVersion ()

static int	GetKVPatchVersion ()

static const Char_t *	GetKVSourceDir ()
	Returns top-level directory of source tree used for build. More...

static const Char_t *	GetKVVersion ()
	Returns KaliVeda version string. More...

static const Char_t *	GetLIBDIRFilePath (const Char_t *namefile="")

static const Char_t *	GetListOfPlugins (const Char_t *base)

static const Char_t *	GetListOfPluginURIs (const Char_t *base)

static const Char_t *	GetPluginURI (const Char_t base, const Char_t plugin)

static void	GetTempFileName (TString &base)

static const Char_t *	GetTEMPLATEDIRFilePath (const Char_t *namefile="")

static const Char_t *	GetWORKDIRFilePath (const Char_t *namefile="")

static const Char_t *	gitBranch ()
	Returns git branch of sources. More...

static const Char_t *	gitCommit ()
	Returns last git commit of sources. More...

static void	InitEnvironment ()

static bool	is_gnuinstall ()

static Bool_t	IsEnvInit ()

static Bool_t	IsThisAPlugin (const TString &uri, TString &base)

static TPluginHandler *	LoadPlugin (const Char_t base, const Char_t uri="0")

static Bool_t	OpenContextMenu (const char method, TObject obj, const char *alt_method_name="")

static void	OpenTempFile (TString &base, std::ofstream &fp)

static void	PrintSplashScreen ()
	Prints welcome message and infos on version etc. More...

static Double_t	ProtectedGetX (const TF1 &func, Double_t val, GetX_status &status, std::optional< Double_t > xmin={}, std::optional< Double_t > xmax={})

static Double_t	ProtectedGetX (const TF1 *func, Double_t val, GetX_status &status, std::optional< Double_t > xmin={}, std::optional< Double_t > xmax={})

static Bool_t	SearchAndOpenKVFile (const Char_t name, KVSQLite::database &dbfile, const Char_t kvsubdir="")

static Bool_t	SearchAndOpenKVFile (const Char_t name, std::ifstream &file, const Char_t kvsubdir="", KVLockfile *locks=0)

static Bool_t	SearchAndOpenKVFile (const Char_t name, std::ofstream &file, const Char_t kvsubdir="", KVLockfile *locks=0)

static Bool_t	SearchKVFile (const Char_t name, TString &fullpath, const Char_t kvsubdir="")

static const Char_t *	WorkingDirectory ()

Static Public Member Functions inherited from TNamed
static TClass *	Class ()

static const char *	Class_Name ()

static constexpr Version_t	Class_Version ()

static const char *	DeclFileName ()

Static Public Member Functions inherited from TObject
static TClass *	Class ()

static const char *	Class_Name ()

static constexpr Version_t	Class_Version ()

static const char *	DeclFileName ()

static Longptr_t	GetDtorOnly ()

static Bool_t	GetObjectStat ()

static void	SetDtorOnly (void *obj)

static void	SetObjectStat (Bool_t stat)

Public Attributes inherited from TObject
	kBitMask

	kCanDelete

	kCannotPick

	kHasUUID

	kInconsistent

	kInvalidObject

	kIsOnHeap

	kIsReferenced

	kMustCleanup

	kNoContextMenu

	kNotDeleted

	kObjInCanvas

	kOverwrite

	kSingleKey

	kWriteDelete

	kZombie

Protected Member Functions inherited from TObject
virtual void	DoError (int level, const char location, const char fmt, va_list va) const

void	MakeZombie ()

Protected Attributes inherited from TNamed
TString	fName

TString	fTitle

Protected Attributes inherited from TObject
	kOnlyPrepStep

Constructor & Destructor Documentation

◆ KVIDZAFromZGridMassHomogenizer()

KVIDZAFromZGridMassHomogenizer::KVIDZAFromZGridMassHomogenizer	(	const TString &	gridfile,
		const TString &	datafile
	)

Prepare mass homogeneity analysis

Parameters

[in]	gridfile	name/path to file containing grids to analyse
[in]	datafile	name/path to ROOT file containing 2D identification maps corresponding to the grids

Note: We assume that the histogram and grid for each telescope have the same name, which allows to associate them easily!

Definition at line 50 of file KVIDZAFromZGridMassHomogenizer.cpp.

Member Function Documentation

◆ Analyse()

void KVIDZAFromZGridMassHomogenizer::Analyse ( double min_yield )

inline

Parameters

[in] min_yield minimum yield (expressed as a fraction of the largest yield in the fit) above which to consider isotopes in mass distributions

Analyse fits for all grids according to the provide minimum (relative) yield cut-off

Definition at line 72 of file KVIDZAFromZGridMassHomogenizer.h.

◆ Clear()

void KVIDZAFromZGridMassHomogenizer::Clear ( )

inline

Reset statistics on isotope masses. After calling Clear(), Analyse() can be called with a different minimum yield threshold.

Definition at line 94 of file KVIDZAFromZGridMassHomogenizer.h.

◆ CorrectMasses()

void KVIDZAFromZGridMassHomogenizer::CorrectMasses	(	int	Z,
		const std::string &	alist,
		int	deltaA,
		const KVNameValueList &	mass_fit_parameters
	)

Apply the given mass-shift to the isotopes for element $Z$ in all grids corresponding to the given 'mass list' (see Print()).

Parameters

[in]	Z	element atomic number
[in]	alist	'mass list' attributed to grids to modify (see Print())
[in]	deltaA	mass modification $\Delta A$ to apply to all isotopes of element, can be positive or negative
[in]	mass_fit_parameters	parameters to control fit; by default KVMultiGaussIsotopeFit::mass_fit_parameters

Definition at line 237 of file KVIDZAFromZGridMassHomogenizer.cpp.

◆ CorrectMassesForTelescope()

void KVIDZAFromZGridMassHomogenizer::CorrectMassesForTelescope	(	int	Z,
		const TString &	idtel,
		int	deltaA,
		const KVNameValueList &	mass_fit_parameters
	)

Apply the given mass-shift to the isotopes for element $Z$ of the given telescope/grid

Parameters

[in]	Z	element atomic number
[in]	idtel	name of grid/telescope to modify
[in]	deltaA	mass modification $\Delta A$ to apply to all isotopes of element, can be positive or negative
[in]	mass_fit_parameters	parameters to control fit; by default KVMultiGaussIsotopeFit::mass_fit_parameters

Definition at line 266 of file KVIDZAFromZGridMassHomogenizer.cpp.

◆ GetGrid()

KVIDZAFromZGrid* KVIDZAFromZGridMassHomogenizer::GetGrid ( const TString & gridname )

inline

Ignore any grids which are run-dependent, i.e. with a runlist

Definition at line 83 of file KVIDZAFromZGridMassHomogenizer.h.

◆ Print()

void KVIDZAFromZGridMassHomogenizer::Print ( void ) const

Print in the terminal the mass distribution statistics obtained from the analysis

For each element $Z$ for which a fit exists in at least 1 grid, this prints out each associated 'mass list' (list of $A$-values, KVNumberList format) and a (partial) list of the telescopes/grids which are concerned

Definition at line 119 of file KVIDZAFromZGridMassHomogenizer.cpp.

◆ SaveGrids()

void KVIDZAFromZGridMassHomogenizer::SaveGrids ( const TString & filename )

Save all grids: overwrites original file if no filename given (filename=""), otherwise writes a new file.

Definition at line 283 of file KVIDZAFromZGridMassHomogenizer.cpp.

◆ ShowFits()

void KVIDZAFromZGridMassHomogenizer::ShowFits	(	int	Z,
		const std::string &	alist
	)

For a given element and 'mass list' (see Print()), display the associated multi-gaussian fits for different grids/telescopes (up to 20 can be displayed).

Definition at line 156 of file KVIDZAFromZGridMassHomogenizer.cpp.

Detailed Description

Public Member Functions

Additional Inherited Members

Constructor & Destructor Documentation

◆ KVIDZAFromZGridMassHomogenizer()

Member Function Documentation

◆ Analyse()

◆ Clear()

◆ CorrectMasses()

◆ CorrectMassesForTelescope()

◆ GetGrid()

◆ Print()

◆ SaveGrids()

◆ ShowFits()